skeleton_keys.slice_angle.slice_angle_tilt#

skeleton_keys.slice_angle.slice_angle_tilt(pin_df, specimen_id, closest_surface_voxel_file, surface_paths_file)#

Estimate angle of slice from CCF pinning information

Parameters:

  • pin_df (DataFrame) – DataFrame with pinning query information

  • closest_surface_voxel_file (str) – Path to closest surface voxel reference HDF5 file

  • surface_paths_file (str) – Path to surface paths (streamlines) HDF5 file

Returns:

predicted_slice_angle – Estimated angle in radians

Return type:

float