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skeleton_keys 0.1.1 documentation

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Installation
User’s Guide
API Reference

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Installation
User’s Guide
API Reference

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Command Line Utilities ( skeleton_keys.cmds )
Database Queries ( skeleton_keys.database_queries )
Depth Profile Features ( skeleton_keys.depth_profile )
Layer Drawings ( skeleton_keys.drawings )
- skeleton_keys.drawings.snap_hand_drawn_polygons
- skeleton_keys.drawings.convert_and_translate_snapped_to_microns
Feature Definition ( skeleton_keys.feature_definition )
- skeleton_keys.feature_definition.default_features
Input/Output ( skeleton_keys.io )
Layer Alignment ( skeleton_keys.layer_alignment )
Plotting ( skeleton_keys.plotting )
- skeleton_keys.plotting.plot_cortical_cell
- skeleton_keys.plotting.plot_layer_polygon
Slice Angle ( skeleton_keys.slice_angle )
- skeleton_keys.slice_angle.slice_angle_tilt
Uprighting Morphologies ( skeleton_keys.upright )
- skeleton_keys.upright.upright_corrected_morph
- skeleton_keys.upright.corrected_without_uprighting_morph

skeleton_keys.cmds.process_morphology_features.analyze_depth_profiles#

skeleton_keys.cmds.process_morphology_features.analyze_depth_profiles(df, preexisting_file, output_file)#

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analyze_depth_profiles()

© Copyright 2022, Nathan Gouwens, Forrest Collman, Matt Mallory, Clare Gamlin.

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