Welcome to skeleton_keys’s documentation!

Contents:

• Installation
  • Supported Platforms
  • Installation Instructions
• User’s Guide
  • Aligning a morphology to a reference set of layers
  • Uprighting a morphology without layer alignment
  • Calculating depth profiles
  • PCA on depth profiles
  • Calculating morphological features
  • Post-processing morphological features
  • Working with general coordinates
• API Reference
  • Command Line Utilities (skeleton_keys.cmds)
  • Database Queries (skeleton_keys.database_queries)
  • Depth Profile Features (skeleton_keys.depth_profile)
  • Layer Drawings (skeleton_keys.drawings)
  • Feature Definition (skeleton_keys.feature_definition)
  • Input/Output (skeleton_keys.io)
  • Layer Alignment (skeleton_keys.layer_alignment)
  • Plotting (skeleton_keys.plotting)
  • Slice Angle (skeleton_keys.slice_angle)
  • Uprighting Morphologies (skeleton_keys.upright)

Indices and tables

• Index

• Module Index

• Search Page